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	<title>microbes &#8211; USA NEWS LIVE</title>
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	<title>microbes &#8211; USA NEWS LIVE</title>
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		<title>Microbes can colonize space, produce medicines and generate energy &#8211; researchers are simulating their inner workings to benefit from this</title>
		<link>https://bloggingthree.soflytech.com/2025/01/microbes-can-colonize-space-produce-medicines-and-generate-energy-researchers-are-simulating-their-inner-workings-to-benefit-from-this/</link>
		
		<dc:creator><![CDATA[chandankumarsoft]]></dc:creator>
		<pubDate>Mon, 06 Jan 2025 15:17:33 +0000</pubDate>
				<category><![CDATA[Technology]]></category>
		<category><![CDATA[advantage]]></category>
		<category><![CDATA[colonize]]></category>
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		<category><![CDATA[generate]]></category>
		<category><![CDATA[Medicines]]></category>
		<category><![CDATA[microbes]]></category>
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		<category><![CDATA[simulating]]></category>
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		<guid isPermaLink="false">https://bloggingthree.soflytech.com/?p=22167</guid>

					<description><![CDATA[After spending so a few years learning how microbes work, researchers are actually digitally recreating their inner workings to unravel challenges resembling: Climate change To Space colonization. In my work as Computational biologistI&#8217;m researching ways to get microbes to provide more useful chemicals resembling fuels and bioplastics that may be utilized in the energy, agricultural [&#8230;]]]></description>
										<content:encoded><![CDATA[<p></p>
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<p>After spending so a few years learning how microbes work, researchers are actually digitally recreating their inner workings to unravel challenges resembling: <a href="https://doi.org/10.1038/nprot.2009.203">Climate change</a> To <a href="https://doi.org/10.1016/j.mimet.2022.106459">Space colonization</a>.</p>
<p>In my work as <a href="https://scholar.google.com/citations?user=Ip7mrm0AAAAJ&#038;hl=en">Computational biologist</a>I&#8217;m researching ways to get microbes to provide more useful chemicals resembling fuels and bioplastics that may be utilized in the energy, agricultural or pharmaceutical industries. Traditionally, researchers need to conduct multiple trial-and-error experiments on Petri dishes to find out the optimal conditions microbes need to provide large amounts of chemicals. </p>
<p>Instead, I&#8217;m capable of simulate these experiments all behind a pc screen using digital blueprints that recreate the insides of microbes. Called <a href="https://doi.org/10.3390/metabo12010014">Genome-scale metabolic models or GEMs</a>These virtual labs significantly reduce the time and price required to work out what researchers have to do to get what they&#8217;re on the lookout for. With GEMs, researchers cannot only explore the complex network of metabolic pathways that enable living organisms to operate, but in addition optimize, test and predict how microbes would behave in several environments, including on other planets. </p>
<p>As GEM technology continues to develop, I consider these models will play an increasingly vital role in shaping the longer term of biotechnology, medicine and space exploration.</p>
<h2>What are genome-scale metabolic models?</h2>
<p><a href="https://doi.org/10.1038/nprot.2009.203">Genome-scale metabolic models</a> are digital maps of all known chemical reactions that happen in cells &#8211; i.e. the cell&#39;s metabolism. These reactions are crucial for converting food into energy, constructing cell structures and detoxifying pollutants. </p>
<p>To create a GEM, I first analyze an organism&#39;s genome, which accommodates the genetic instructions that cells use to provide proteins. A kind of protein encoded within the genome <a href="https://www.genome.gov/genetics-glossary/Enzyme">so-called enzymes</a> are the workhorses of metabolism – they facilitate the conversion of nutrients into energy and constructing blocks for cells. </p>
<p>By linking the genes that encode enzymes to the chemical reactions they allow, I can create a comprehensive model that maps the connections between genes, reactions, and metabolites.</p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:75.06631299734748%;--background-color:#9ca15e"><img decoding="async" alt="Diagram made of multicolored intersecting lines and circles, similar to a subway map" class="lazyload" src="https://images.theconversation.com/files/633673/original/file-20241121-15-sq25lf.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/633673/original/file-20241121-15-sq25lf.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=450&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/633673/original/file-20241121-15-sq25lf.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=450&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/633673/original/file-20241121-15-sq25lf.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=450&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/633673/original/file-20241121-15-sq25lf.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=566&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/633673/original/file-20241121-15-sq25lf.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=566&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/633673/original/file-20241121-15-sq25lf.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=566&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">This map shows just a few of an important metabolic pathways in cells.</span><br />
              <span class="attribution"><a class="source" href="https://commons.wikimedia.org/wiki/File:Metabolic_Metro_Map.svg">Source/Wikimedia Commons</a></span><br />
            </figcaption></figure>
<p>Once I construct a GEM, I exploit some advanced computer simulations to make it function like a living cell or microbe. One of essentially the most common algorithms researchers use to perform these simulations is named a <a href="https://doi.org/10.1038/nbt.1614">Flow balance evaluation</a>. This mathematical algorithm analyzes available data about metabolism after which makes predictions about how various chemical reactions and metabolites would behave under certain conditions.</p>
<p>This makes GEMs particularly useful for understanding how organisms reply to genetic changes and environmental stresses. For example, I can use this method to predict how an organism will react if a specific gene is switched off. I could also use it to predict how it would adapt to the presence of various chemicals in its environment or to an absence of food.</p>
<h2>Solving energy and climate challenges</h2>
<p>Most chemicals utilized in agriculture, pharmaceuticals and fuels are <a href="https://www.wri.org/insights/defossilizing-us-chemical-production">obtained from fossil fuels</a>. However, fossil fuels are a limited resource and <a href="https://science.nasa.gov/climate-change/causes/">contribute significantly</a> on climate change. </p>
<p>Instead of generating energy from fossil fuels, my team&#8230; <a href="https://www.glbrc.org/">Great Lakes Bioenergy Research Center</a> from the University of Wisconsin-Madison focuses on developing sustainable biofuels and bioproducts from plant waste. This includes corn stalks after the ears have been harvested, inedible plants resembling grass and algae. We study which plant waste may be used for bioenergy, the way to convert it into energy using microbes, and the way to sustainably manage the land on which these plants are grown.</p>
<p>I&#39;m constructing a genome-scale metabolic model for <a href="https://doi.org/10.3390/metabo12040366"></a>a kind of bacteria that may do this <a href="https://doi.org/10.1128/aem.01268-23">convert very complex chemicals</a> in plant waste <a href="https://doi.org/10.1128/aem.01660-23">Chemicals which can be helpful to humans</a>for instance, those used to provide bioplastics, pharmaceuticals and fuels. With a greater understanding of this conversion process, I can improve the model to more accurately simulate the conditions required to synthesize larger quantities of those chemicals. </p>
<p>Researchers can then replicate these conditions in real life to create materials which can be cheaper and more accessible than those constructed from fossil fuels.</p>
<figure>
<p><iframe title="Bioinformatics: How Data Saves Lives: Crash Course Biology #40" width="1170" height="658" src="https://www.youtube.com/embed/o-WFU5ovaTc?feature=oembed" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" referrerpolicy="strict-origin-when-cross-origin" allowfullscreen></iframe></p><figcaption><span class="caption">Bioinformatics analyzes biological data to reply questions on living organisms.</span></figcaption></figure>
<h2>Extreme microbial and space colonization</h2>
<p>There are microbes on Earth that may survive in extremely harsh environments. For example, <a href="https://doi.org/10.1002/mbo3.1328"></a>    can live in extremely salty conditions. Similar, <a href="https://doi.org/10.1016/j.mimet.2022.106459"></a>    can thrive in very acidic environments.</p>
<p>Since other planets typically have similarly harsh climates, these microbes may not only have the option to thrive and multiply on those planets, but could also potentially change the environment in order that humans can live there too. </p>
<p>By combining GEMs with machine learning, I even have seen and may do that <a href="https://doi.org/10.1002/biot.202400267">subject to chemical changes</a> that help them survive in extreme conditions. They have special proteins of their cell partitions that work with enzymes to balance the chemicals of their internal environment with the chemicals of their external environment.</p>
<p>GEMs allow scientists to simulate the environments of other planets to check how microbes survive without necessarily having to go to those planets themselves.</p>
<h2>The way forward for GEMs</h2>
<p>Every day, researchers generate large amounts of knowledge about microbial metabolism. Advances in GEM technology open the door to exciting latest possibilities in medicine, energy, space travel and other areas.</p>
<p><a href="https://doi.org/10.1016/j.tibtech.2024.02.008">Synthetic biologists</a> can use GEMs to design entirely latest organisms or metabolic pathways from scratch. This area could advance bioproduction by enabling the creation of organisms that efficiently produce latest materials, medicines and even food. </p>
<p>GEMs of the whole human body may function <a href="https://doi.org/10.1126/scisignal.aaz1482">Atlas for the metabolism of complex diseases</a>. They can assist map how the body&#39;s chemical environment changes with obesity or diabetes.</p>
<p>Whether producing biofuels or developing latest organisms, GEMs represent a strong tool for each basic research and industrial applications. As computational biology and GEMs advance, these technologies will proceed to rework the best way scientists do the Understanding and manipulating the metabolism of living organisms.</p>
</p></div>
<p><em>image credit : theconversation.com</em></p>
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		<title>Do you get chronic urinary tract infections? Future treatments could add more bacteria to your bladder to fight off harmful microbes</title>
		<link>https://bloggingthree.soflytech.com/2024/11/do-you-get-chronic-urinary-tract-infections-future-treatments-could-add-more-bacteria-to-your-bladder-to-fight-off-harmful-microbes/</link>
		
		<dc:creator><![CDATA[chandankumarsoft]]></dc:creator>
		<pubDate>Fri, 15 Nov 2024 20:31:34 +0000</pubDate>
				<category><![CDATA[Technology]]></category>
		<category><![CDATA[add]]></category>
		<category><![CDATA[bacteria]]></category>
		<category><![CDATA[bladder]]></category>
		<category><![CDATA[chronic]]></category>
		<category><![CDATA[fight]]></category>
		<category><![CDATA[future]]></category>
		<category><![CDATA[harmful]]></category>
		<category><![CDATA[Infections]]></category>
		<category><![CDATA[microbes]]></category>
		<category><![CDATA[tract]]></category>
		<category><![CDATA[treatments]]></category>
		<category><![CDATA[urinary]]></category>
		<guid isPermaLink="false">https://bloggingthree.soflytech.com/?p=19195</guid>

					<description><![CDATA[Millions of individuals within the United States and around the globe suffer from urinary tract infections yearly. Some groups are special susceptible to chronic urinary tract infectionsincluding women, older adults and a few veterans. These infections are often treated with antibiotics, nonetheless excessive use of those medications may cause the microbes they aim to grow [&#8230;]]]></description>
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<p><a href="https://www.kidney.org/kidney-topics/urinary-tract-infections">Millions of individuals</a> within the United States and around the globe suffer from urinary tract infections yearly. Some groups are special <a href="https://www.cdc.gov/uti/about/index.html">susceptible to chronic urinary tract infections</a>including women, older adults and a few veterans.</p>
<p>These infections are often treated with antibiotics, nonetheless <a href="https://www.ncbi.nlm.nih.gov/books/NBK436013/">excessive use of those medications</a> may cause the microbes they aim to grow to be resistant and reduce the effectiveness of the drugs.</p>
<p>To solve this problem of chronic urinary tract infections and antibiotic resistance, we&#8217;ve got pooled our expertise <a href="https://vetmed.tamu.edu/person/8331/">in microbiology</a> <a href="https://scholar.google.com/citations?user=RlM2wKUAAAAJ&#038;hl=en">and engineering</a> to create a living material that harbors a certain style of useful substance. Our research shows that the <a href="https://doi.org/10.1128/iai.00173-24">“Good” bacteria are released from this biomaterial</a> can compete with “bad” bacteria for nutrients and win, dramatically reducing the variety of disease-causing microbes. </p>
<p>We consider that, if further developed, this system could help treat recurrent UTIs that don&#8217;t reply to antibiotics.</p>
<h2>Brings bacteria into the bladder</h2>
<p>Nutrients are limited for the microbes living in humans and their abundance varies depending on the a part of the body. Bacteria need to <a href="https://doi.org/10.1038/nrmicro2836">compete with other microbes and the host</a> to acquire vital nutrients. By absorbing available nutrients, helpful bacteria can do that <a href="https://doi.org/10.1038/s41579-022-00833-7">Stop or slow the expansion of harmful bacteria</a>. When harmful bacteria lack vital nutrients, they can not grow in sufficient numbers to cause disease. </p>
<p>However, helpful bacteria are added to the bladder to stop urinary tract infections. On the one hand, these helpful bacteria can only colonize naturally in individuals who do <a href="https://doi.org/10.1016/S0022-5347(01)63246-4">unable to completely empty her bladder</a>a condition called urinary retention. Even in these patients, the length of time these bacteria can colonize their bladder varies greatly. </p>
<p>Current methods of delivering bacteria into the bladder are invasive and require <a href="https://doi.org/10.1016/j.juro.2010.03.024">repeated insertion of the catheter</a>. Even if bacteria are successfully released into the bladder, <a href="https://doi.org/10.1128/iai.74.1.781-785.2006">Urine will flush out these microbes</a> because they can not adhere to the bladder wall.</p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:75.06631299734748%;--background-color:#5f2e48"><img decoding="async" alt="Photomicrograph of clusters of pink sticks scattered across a blue textured wall, while yellow blobs extend thin tendrils across the clusters" class="lazyload" src="https://images.theconversation.com/files/631888/original/file-20241113-17-eebwjf.jpg?ixlib=rb-4.1.0&#038;rect=0%2C0%2C538%2C404&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/631888/original/file-20241113-17-eebwjf.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=450&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/631888/original/file-20241113-17-eebwjf.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=450&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/631888/original/file-20241113-17-eebwjf.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=450&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/631888/original/file-20241113-17-eebwjf.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=566&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/631888/original/file-20241113-17-eebwjf.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=566&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/631888/original/file-20241113-17-eebwjf.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=566&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">This microscope image shows a mouse&#39;s bladder covered in (pink) (blue) and the white blood cells attacking it (yellow).</span><br />
              <span class="attribution"><a class="source" href="https://www.flickr.com/photos/nihgov/34168360594/">Valerie O&#39;Brien, Matthew Joens, Scott J. Hultgren, James AJ Fitzpatrick, Washington University, St. Louis/NIH via Flickr</a>, <a class="license" href="http://creativecommons.org/licenses/by-nc/4.0/">CC BY-NC</a></span><br />
            </figcaption></figure>
<h2>Biomaterials for the treatment of urinary tract infections</h2>
<p>Because helpful bacteria cannot attach and survive within the bladder for long, we developed a biomaterial that may slowly release bacteria within the bladder over time. </p>
<p>Our biomaterial consists of life <a href="https://doi.org/10.1128/iai.00173-24"> embedded in a matrix structure</a> manufactured from gel. It resembles a chunk of jelly about 500 times smaller than a drop of water and might release bacteria into the bladder for as much as two weeks. Supplying the bacteria via biomaterial eliminates the necessity for the bacteria to connect to the bladder with the intention to remain within the organ. </p>
<p>We tested our biomaterial by placing it in human urine in petri dishes and exposing it to bacterial pathogens that cause urinary tract infections. Our results showed that with a 50:50 mix the <a href="https://doi.org/10.1128/iai.00173-24"> displaced the bacteria that cause urinary tract infections</a> by increasing to around 85% of the whole population. If we added greater than urinary tract infection-causing bacteria, which we envision for future development and testing, the proportion rose to over 99% of the population, essentially wiping out the urinary tract infection-causing bacteria. In addition, the biomaterial continued to be released in human urine for as much as two weeks. </p>
<p>Our results suggest that they&#8217;ll remain and survive within the bladder for an prolonged time frame <a href="https://doi.org/10.1128/iai.00173-24">successfully curb growth</a> of many forms of bacteria that cause urinary tract infections. </p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:56.233421750663126%;--background-color:#967261"><img decoding="async" alt="Person presses hands against stomach" class="lazyload" src="https://images.theconversation.com/files/631899/original/file-20241113-17-ag3g88.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/631899/original/file-20241113-17-ag3g88.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=338&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/631899/original/file-20241113-17-ag3g88.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=338&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/631899/original/file-20241113-17-ag3g88.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=338&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/631899/original/file-20241113-17-ag3g88.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=424&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/631899/original/file-20241113-17-ag3g88.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=424&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/631899/original/file-20241113-17-ag3g88.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=424&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">Urinary tract infections will be painful.</span><br />
              <span class="attribution"><a class="source" href="https://www.gettyimages.com/detail/photo/woman-having-abdominal-pain-because-of-her-royalty-free-image/1487230316">Images we create and what actually happens are all the time nice when we&#8217;ve got Fantasy/iStock via Getty Images Plus</a></span><br />
            </figcaption></figure>
<h2>Improve biomaterials</h2>
<p>Our results show that not only harmful bacteria, to which it&#8217;s closely related, will be controlled, but additionally a <a href="https://doi.org/10.1128/iai.00173-24">wide spectrum of pathogenic bacteria</a> in humans and animals. This implies that scientists may not have to discover several types of helpful bacteria to combat every pathogen &#8211; and there are various &#8211; that may cause a urinary tract infection.</p>
<p>Our team is currently investigating how effectively our biomaterial can cure urinary tract infections in mice. We are also working to discover the particular nutrients that helpful and harmful bacteria compete for, and what aspects may also help helpful bacteria win. We could add these nutrients to our biomaterial to release or retain them.</p>
<p>This research continues to be in its early stages and clinical application shouldn&#8217;t be yet under development. So if it reaches patients, things will go well in the long run. We hope that our technology will be refined and used to combat other bacterial infections and a few others <a href="https://www.cancer.org/cancer/risk-prevention/infections/infections-that-can-lead-to-cancer/bacteria.html">Cancers attributable to bacteria</a>.</p>
</p></div>
<p><em>image credit : theconversation.com</em></p>
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		<title>Is weight reduction so simple as calories in and calories out? Ultimately, it&#039;s your gut microbes and food waste that make your calories count</title>
		<link>https://bloggingthree.soflytech.com/2024/09/is-weight-reduction-so-simple-as-calories-in-and-calories-out-ultimately-its-your-gut-microbes-and-food-waste-that-make-your-calories-count/</link>
		
		<dc:creator><![CDATA[chandankumarsoft]]></dc:creator>
		<pubDate>Tue, 10 Sep 2024 18:23:15 +0000</pubDate>
				<category><![CDATA[News]]></category>
		<category><![CDATA[calories]]></category>
		<category><![CDATA[count]]></category>
		<category><![CDATA[food]]></category>
		<category><![CDATA[gut]]></category>
		<category><![CDATA[It39s]]></category>
		<category><![CDATA[loss]]></category>
		<category><![CDATA[microbes]]></category>
		<category><![CDATA[simple]]></category>
		<category><![CDATA[ultimately]]></category>
		<category><![CDATA[waste]]></category>
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					<description><![CDATA[Is the saying “Calories in, calories out“ true? The short answer is yes, but the entire story is more nuanced. From the moment food touches your tongue to the moment it leaves your body, Digestive system And Gut microbiome work to extract the nutrients. Enzymes in your mouth, stomach and small intestine break down food [&#8230;]]]></description>
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<p>Is the saying “<a href="https://doi.org/10.1093/ajcn/nqac031">Calories in, calories out</a>“ true? The short answer is yes, but the entire story is more nuanced. </p>
<p>From the moment food touches your tongue to the moment it leaves your body, <a href="https://www.niddk.nih.gov/health-information/digestive-diseases/digestive-system-how-it-works#">Digestive system</a> And <a href="https://doi.org/10.1136/bmj.k2179">Gut microbiome</a> work to extract the nutrients. Enzymes in your mouth, stomach and small intestine break down food for absorption, while microbes in your large intestine digest the leftovers.</p>
<p>&#8220;<a href="https://doi.org/10.1093/ajcn/nqac031">Calorie intake, calorie consumption</a>&#8220;&#8221; refers back to the concept that weight change is decided by the balance between calories taken in and calories burned. This includes not only the variety of calories you eat through appetite and absorb through digestion, but additionally how well those calories you&#8217;re taking in are burned through metabolism.</p>
<p>Recent research shows that a key factor affecting the <a href="https://doi.org/10.1016/j.advnut.2023.03.016">variable appetite, digestion and metabolism</a> are biologically lively residues of food called bioactives. These bioactives play a key role in regulating the body&#39;s metabolic control centers: your brain&#39;s appetite center, the hypothalamus; your gut&#39;s digestive bioreactor, the microbiome; and your cells&#39; metabolic powerhouses, the mitochondria.</p>
<p><a href="https://gastro.uw.edu/people/faculty/damman-c">I&#8217;m a gastroenterologist</a> who has spent the last 20 years studying the role of the gut microbiome in metabolic disease. I&#8217;ll explain how dietary bioactives help explain why some people can eat more but gain less weight, and I&#8217;ll share some <a href="https://gutbites.org/carb-fiber-ratio-calculator/">dietary tools</a> to enhance metabolism.</p>
<h2>Worrying about appetite and digestion</h2>
<p>Studies have shown that eating whole foods which can be still of their <a href="https://doi.org/10.3390/nu16142240">Original fibers</a> <a href="https://doi.org/10.1002%2Fmnfr.202101113">and polyphenols</a> – the cell membranes and colourful compounds in plants that provide lots of their health advantages – result in more calories <a href="https://doi.org/10.1038/s41467-023-38778-x">lost through bowel movements</a>in comparison with processed foods, which <a href="https://www.washingtonpost.com/wellness/2023/06/27/ultra-processed-foods-predigested-health-risks/">were “pre-digested</a>“ converted by factories into easy carbohydrates, refined fats and additives.</p>
<p>This is a technique non-calorie aspects affect the &#8220;calories in, calories out&#8221; equation, which could be useful in a society where calorie intake often exceeds needs. Eating more whole foods and fewer processed foods simply means that you can eat more because more of those unprocessed calories <a href="https://doi.org/10.1038/s41467-023-38778-x">from the opposite end</a> unused.</p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:56.233421750663126%;--background-color:#ac8f66"><img decoding="async" alt="Selection of fruits, vegetables and grains" class="lazyload" src="https://images.theconversation.com/files/618298/original/file-20240909-16-eo977y.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/618298/original/file-20240909-16-eo977y.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=337&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/618298/original/file-20240909-16-eo977y.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=337&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/618298/original/file-20240909-16-eo977y.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=337&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/618298/original/file-20240909-16-eo977y.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=424&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/618298/original/file-20240909-16-eo977y.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=424&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/618298/original/file-20240909-16-eo977y.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=424&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">High-fiber foods – equivalent to a number of nuts, seeds, fruits, vegetables and whole grains – can make it easier to regulate your appetite.</span><br />
              <span class="attribution"><a class="source" href="https://www.gettyimages.com/detail/photo/group-of-food-with-high-content-of-dietary-fiber-royalty-free-image/1457889029">fcafotodigital/E+ via Getty Images</a></span><br />
            </figcaption></figure>
<p>Fiber and <a href="https://gutbites.org/2024/01/18/like-fiber-polyphenols-in-food-boost-glp-1-ignite-mitochondria-help-coordinate-metabolic-health/">Polyphenols</a> also help regulate your appetite and calorie intake via the brain. Your microbiome converts these leftover bioactives into metabolites – molecular byproducts of digestion – that naturally reduce your appetite. These metabolites regulate the identical gut hormones that first inspired the favored weight reduction drugs Wegovy, Ozempic and Mounjaro, controlling appetite via your <a href="https://doi.org/10.1038/mp.2017.187">Saturation center of the brain, the hypothalamus</a>.</p>
<p><a href="https://doi.org/10.1136%2Fbmj-2023-075294">Processed foods</a> These bioactive substances are missing and are moreover formulated with <a href="https://www.randomhousebooks.com/books/209536/">Salt, sugar, fat</a> And <a href="https://doi.org/10.1016/j.pathophys.2018.04.002">Additives</a> to be <a href="https://doi.org/10.1002/oby.22639">extremely tasty</a>which makes you long for it and <a href="https://doi.org/10.1016/j.cmet.2019.05.008">eat more</a>.</p>
<h2>Mitochondrial masters in the center</h2>
<p>A whole calorie count also relies on how effectively your body burns them to power your movement, thoughts, immunity, and other functions – a process that is essentially orchestrated by <a href="https://doi.org/10.1016/j.cell.2012.02.035">Your mitochondria</a>.</p>
<p>Healthy people often have <a href="https://doi.org/10.1113/jp273040">High capability mitochondria</a> easily process calories to fuel cell functions. People with metabolic diseases have <a href="https://doi.org/10.1038/s42255-024-00978-0">Mitochondria that don&#8217;t function so well</a>and contributes to <a href="https://doi.org/10.1038/nrendo.2014.160">greater appetite</a>, <a href="https://doi.org/10.3390/nu13103519">less muscles</a> And <a href="https://doi.org/10.3390%2Fnu15204430">increased fat storage</a>. </p>
<p>They even have less of a mitochondria-rich kind of fat called <a href="https://doi.org/10.1073/pnas.2216435119">brown fat</a>. Instead of storing calories, this fat burns them to generate heat. Less brown fat may explain why some individuals with obesity <a href="https://pubmed.ncbi.nlm.nih.gov/19768183">lower body temperatures</a> than those that should not obese, and why there&#8217;s a <a href="https://doi.org/10.7554/eLife.49555">Decrease in average body temperature</a> within the USA since the economic revolution.</p>
<p>Healthy mitochondria that burn more calories could also explain why some people can eat more <a href="https://doi.org/10.1093%2Fajcn%2Fnqz144">without gaining weight</a>. However, this raises the query: Why do some people have healthier mitochondria than others?</p>
<p>Your <a href="https://doi.org/10.3389/fphys.2023.1114231">Mitochondrial health</a> is ultimately influenced by many aspects, including those normally related to general well-being: regular exercise, adequate sleep, stress management, and a healthy eating regimen. </p>
<h2>Who turned off the Metabo lights?</h2>
<p>The latest dietary research reveals the role that previously underestimated dietary aspects play in <a href="https://doi.org/10.1016/j.advnut.2023.03.016">Mitochondrial health</a>In addition to the essential macronutrients – fat, protein and carbohydrates – and micronutrients equivalent to vitamins and minerals, other residual aspects in food, including <a href="https://doi.org/10.1016/j.tim.2023.07.014">Fibers</a>, <a href="https://doi.org/10.1016/j.tem.2020.02.011">Polyphenols</a>, <a href="https://doi.org/10.3390/nu16081133">bioactive fats</a> And <a href="https://doi.org/10.1126/sciadv.adn4508">Fermentation products</a>are also crucial for metabolism.  </p>
<p>In contrast to a <a href="https://doi.org/10.3390%2Fnu15122749">Western eating regimen</a>which regularly lack these bioactive substances, traditional diets equivalent to <a href="https://doi.org/10.3390%2Fnu14153112">Mediterranean</a> And <a href="https://doi.org/10.3390%2Fantiox9100932">Okinawa (Indonesia)</a> The eating regimen is wealthy in foods – nuts, seeds, fruits, vegetables, whole grains and fermented foods – which can be wealthy in these aspects. Many bioactives pass undigested through the small intestine into the big intestine, where the <a href="https://doi.org/10.1016/j.advnut.2023.03.016">Microbiome transforms them</a> into activated metabolites. These metabolites are then absorbed and affect the variety of mitochondria in cells and their function.</p>
<figure>
<p><iframe title="How the food you eat affects your gut - Shilpa Ravella" width="1170" height="658" src="https://www.youtube.com/embed/1sISguPDlhY?feature=oembed" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" referrerpolicy="strict-origin-when-cross-origin" allowfullscreen></iframe></p><figcaption><span class="caption">The food you eat shapes your microbiome and its metabolites.</span></figcaption></figure>
<p>At probably the most basic level of cell biology, metabolites are turned on and off <a href="https://doi.org/10.3389/fphar.2020.01225">molecular switches</a> <a href="https://doi.org/10.1093/jn/133.7.2485s">in your genes</a> through a process <a href="https://doi.org/10.1016/j.tcb.2017.02.004">called epigenetics</a> which each you and <a href="https://doi.org/10.3390/cimb46050265">Your offspring</a>When the metabolic lights are turned on, they stimulate the mitochondria, that are accountable for a faster metabolism, effectively increasing your calorie burn. </p>
<h2>Please note the microbiome gap</h2>
<p>A healthy microbiome produces a spread of useful metabolites that support calorie burning. <a href="https://doi.org/10.3389/fphys.2018.01908">brown fat</a>, <a href="https://doi.org/10.1001/jamanetworkopen.2021.44279">Muscle endurance</a> and metabolic health. But <a href="https://doi.org/10.1038/s41430-021-00950-1">not everyone</a> has a microbiome that&#8217;s in a position to convert bioactive substances into their lively metabolites.</p>
<p>Long-term consumption of <a href="https://doi.org/10.3390%2Fnu11102287">processed foods</a>low in <a href="https://doi.org/10.1016/j.advnut.2023.03.016">Bioactive substances</a> and wealthy in salt and <a href="https://doi.org/10.1038/s41575-024-00893-5">Additives</a>can impair the power of the microbiome to provide the metabolites needed for optimal mitochondrial health. <a href="https://doi.org/10.1016%2Fj.chom.2019.10.011">Excessive use of antibiotics</a>, <a href="https://doi.org/10.1016/j.cell.2024.07.019">high stress</a> And <a href="https://doi.org/10.1155%2F2017%2F3831972">Lack of exercise</a> also can negatively impact the health of the microbiome and mitochondria.</p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:55.03978779840849%;--background-color:#522e2c"><img decoding="async" alt="Illustration of microbes colonizing intestinal villi" class="lazyload" src="https://images.theconversation.com/files/618308/original/file-20240909-18-ardexp.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/618308/original/file-20240909-18-ardexp.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=330&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/618308/original/file-20240909-18-ardexp.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=330&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/618308/original/file-20240909-18-ardexp.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=330&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/618308/original/file-20240909-18-ardexp.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=415&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/618308/original/file-20240909-18-ardexp.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=415&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/618308/original/file-20240909-18-ardexp.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=415&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">The microbes that populate your gut could be helpful or harmful.</span><br />
              <span class="attribution"><a class="source" href="https://www.gettyimages.com/detail/illustration/microbiota-of-the-human-intestine-royalty-free-illustration/1205739105">Christoph Burgstedt/Science Photo Library via Getty Images</a></span><br />
            </figcaption></figure>
<p>This creates a double dietary gap: an absence of healthy food and an absence of <a href="https://doi.org/10.1080/19490976.2024.2367301">Microbes for the conversion of bioactive substances</a>As a result, well-studied dietary approaches equivalent to the Mediterranean eating regimen could also be less effective in some individuals with an impaired microbiome, potentially resulting in <a href="https://doi.org/10.3389/fped.2020.620189">Gastrointestinal symptoms</a> equivalent to diarrhea and negative effects on metabolic health.</p>
<p>In these cases, dietary research examines the potential health advantages of varied <a href="https://doi.org/10.1038/s41392-021-00831-w">Low-carb diets</a> This can <a href="https://doi.org/10.1038/s41392-021-00549-9">avoid the necessity</a> for a healthy microbiome. While the upper protein in these diets <a href="https://doi.org/10.3945/ajcn.110.002188">Reduce microbiome production</a> of useful metabolites, the less carbohydrates stimulate the body&#39;s production of ketones. One ketone, beta-hydroxybutyrate, may function similarly to the microbiome <a href="https://doi.org/10.1038/s41598-018-36941-9">Metabolite butyrate</a> In <a href="https://doi.org/10.1038/s41598-018-36941-9">Regulation of mitochondria</a>.</p>
<p>New approaches to targeting the microbiome can also prove helpful in improving your metabolic health: <a href="https://gutbites.org/2024/08/18/what-is-a-postbiotic/">Butyrate and other postbiotics</a> Providing ready-made microbiome metabolites, <a href="https://doi.org/10.1038/s41579-019-0256-8">personalized nutrition</a> Adapt your eating regimen to your microbiome, <a href="https://doi.org/10.1038/s41522-023-00386-4">intermittent fasting</a> to repair your microbiome and the long run possibility of <a href="https://doi.org/10.1038/s41467-020-15508-1">Live bacterial therapies</a> to revive microbiome health.</p>
<h2>Tools for converting fat into fuel</h2>
<p>For most individuals, restoring the microbiome through traditional diets just like the Mediterranean eating regimen is biologically feasible, but on account of challenges equivalent to time, cost, and taste preferences, it will not be all the time practical. Ultimately, maintaining metabolic health comes right down to the deceptively easy <a href="https://gutbites.org/2022/05/18/the-pillars-of-health/">Pillars of a healthy lifestyle</a> of exercise, sleep, stress management and nutritious eating regimen.</p>
<p>However, some easy suggestions and tools may help make selecting a nutritious eating regimen easier. Mnemonics equivalent to the <a href="https://gutbites.org/2022/05/14/missing-microbes-and-the-four-fs-of-food/">The 4 F&#39;s of nutrition</a> – fiber, polyphenols, unsaturated fats and ferments – can make it easier to focus your “leftovers” on the foods that best support your microbiome and mitochondria. <a href="https://gutbites.org/carb-fiber-ratio-calculator/">Bioactive calculators and apps</a> will also be helpful in selecting foods to regulate your appetite, digestion and metabolism, thereby bringing your calorie intake back into balance.</p>
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<p><em>image credit : theconversation.com</em></p>
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		<title>Found dead within the snow – how microbes will help determine the time of death in forensic investigations under icy conditions</title>
		<link>https://bloggingthree.soflytech.com/2024/09/found-dead-within-the-snow-how-microbes-will-help-determine-the-time-of-death-in-forensic-investigations-under-icy-conditions/</link>
		
		<dc:creator><![CDATA[chandankumarsoft]]></dc:creator>
		<pubDate>Mon, 09 Sep 2024 23:14:24 +0000</pubDate>
				<category><![CDATA[Technology]]></category>
		<category><![CDATA[conditions]]></category>
		<category><![CDATA[dead]]></category>
		<category><![CDATA[death]]></category>
		<category><![CDATA[determine]]></category>
		<category><![CDATA[forensic]]></category>
		<category><![CDATA[icy]]></category>
		<category><![CDATA[investigations]]></category>
		<category><![CDATA[microbes]]></category>
		<category><![CDATA[snow]]></category>
		<category><![CDATA[time]]></category>
		<guid isPermaLink="false">https://bloggingthree.soflytech.com/?p=14310</guid>

					<description><![CDATA[What happens to a body in a particularly cold environment? Does it decompose? How do these conditions affect how forensic scientists determine the person&#39;s time of death? Estimation of the time of death, also postmortem intervalis a fancy task. It plays a vital role in forensic investigations as it will possibly provide vital insights into [&#8230;]]]></description>
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<p>What happens to a body in a particularly cold environment? Does it decompose? How do these conditions affect how forensic scientists determine the person&#39;s time of death?</p>
<p>Estimation of the time of death, also <a href="https://doi.org/10.1016/j.forsciint.2015.07.024">postmortem interval</a>is a fancy task. It plays a vital role in forensic investigations as it will possibly provide vital insights into the timeline of events that led to an individual&#39;s death. This information can narrow down potential scenarios and suspects, helping to resolve crimes. </p>
<p>Quite a lot of aspects come into play on the scene of a death, from environmental conditions to the state of health of the person before death. In the past, scientists have estimated the time of death by observing postmortem physical and biological changes within the body, equivalent to stiffening, fluid retention, and cooling. </p>
<p>However, these methods are limited by their variability and dependence on external aspects. Calculating the postmortem interval became more precise with the arrival of molecular biology. But it remains to be a difficult task, especially in extremely cold weather conditions. In the primary few months after death, a frozen body often lacks obvious signs of decomposition.</p>
<p>We are forensic scientists and lead the forensic programs at <a href="https://campus.und.edu/directory/lavinia.iancu">University of North Dakota</a> and the <a href="https://scholar.google.com/citations?user=sOY9daIAAAAJ&#038;hl=it&#038;oi=ao">University of Central Lancashire</a>. We are using molecular biology and bioinformatics to develop tools to assist researchers and investigators estimate the postmortem interval more accurately. Our research, recently published in Frontiers in Microbiology, found that <a href="https://doi.org/10.3389/fmicb.2024.1392716">Investigation of the microbes involved in decomposition</a> was in a position to predict the time elapsed since death under extreme cold conditions with high accuracy.</p>
<h2>Decomposition in cold environments</h2>
<p>Our study took place in Grand Forks, North Dakota, certainly one of the <a href="https://www.thetravel.com/coldest-cities-in-the-us/">coldest cities within the United States</a>where winters are characterised by temperatures reaching <a href="https://www.weather.gov/fgf/climategraphs">-40 degrees Fahrenheit (-40 degrees Celsius)</a> and powerful winds that may reach <a href="https://www.grandforksherald.com/weather/blizzard-finley-with-winds-that-could-gust-past-50-mph-prompts-blizzard-warning-for-grand-forks-region">as much as 31 miles per hour (50 kilometers per hour)</a>.</p>
<p>In a particularly cold environment equivalent to North Dakota winters, traditional methods will not be sufficient to grasp decomposition and estimate time of death. For example, the body cools far more quickly in cold temperatures, which might distort estimates based on body temperature. </p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:66.71087533156499%;--background-color:#6f798b"><img decoding="async" alt="Barren field covered with snow in weak sunlight" class="lazyload" src="https://images.theconversation.com/files/617367/original/file-20240904-16-re9qqc.JPG?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/617367/original/file-20240904-16-re9qqc.JPG?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/617367/original/file-20240904-16-re9qqc.JPG?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/617367/original/file-20240904-16-re9qqc.JPG?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/617367/original/file-20240904-16-re9qqc.JPG?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/617367/original/file-20240904-16-re9qqc.JPG?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/617367/original/file-20240904-16-re9qqc.JPG?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">The researchers moved their investigation to Grand Forks, North Dakota, where winters might be very harsh, on the time of death.</span><br />
              <span class="attribution"><span class="source">Lavinia Iancu</span>, <a class="license" href="http://creativecommons.org/licenses/by-sa/4.0/">CC BY-SA</a></span><br />
            </figcaption></figure>
<p>Likewise, cold environments can delay the onset and duration of rigor mortis, or stiffening of the body. The decomposition process, including the activity of insects and other scavengers that contribute to the decay of the body, can be slowed or stopped by freezing temperatures.</p>
<p>Snow is one other vital consider the study of decomposition. It can isolate a body by <a href="http://dx.doi.org/10.2307/1552029">Store residual heat</a> and its temperature becomes barely higher than that of the environment. Due to this insulating effect, the body decomposes more slowly than bodies exposed to the open air. </p>
<h2>Microbes and the time since death</h2>
<p>In extreme cold, using additional tools is essential to grasp the decomposition process and estimate the time of death. <a href="https://doi.org/10.1002/pmic.202200335">Advanced molecular techniques</a>equivalent to evaluation of the microbiome, gene expression and protein degradation, will help provide useful information in regards to the crime scene.</p>
<p>Each organism has different microbial properties that <a href="https://doi.org/10.1016/j.jflm.2021.102223">act like a fingerprint</a>The necrobiome, a community of microbes related to decaying stays, plays an important role in decay. Certain microbes are present during <a href="https://doi.org/10.1371/journal.pone.0077733">different stages of decomposition</a>which helps break down tissue and recycle nutrients. Forensic investigators can take samples of what microbes live in a dead body to make use of the composition of the microbial population to find out how way back an individual died.</p>
<p>Our study focused on identifying <a href="https://doi.org/10.3389/fmicb.2024.1392716">Common patterns of microbial changes</a> that occur during decomposition in extremely cold environments. Over a period of 23 weeks, we collected and analyzed 393 microbial samples from the within and outdoors of the noses of dead pigs that were covered in snow. Pigs decompose in an analogous option to humans and are <a href="https://doi.org/10.1007/s00414-019-02074-5">often utilized in forensic research</a>We developed models to estimate the postmortem interval by pairing microbial genetic data with environmental data equivalent to snow depth and outdoor temperature.</p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:66.71087533156499%;--background-color:#364652"><img decoding="async" alt="Person puts swab in the nose of a dead pig lying on its side behind a fence in the snow" class="lazyload" src="https://images.theconversation.com/files/617362/original/file-20240904-18-zlj4hw.JPG?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/617362/original/file-20240904-18-zlj4hw.JPG?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/617362/original/file-20240904-18-zlj4hw.JPG?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/617362/original/file-20240904-18-zlj4hw.JPG?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/617362/original/file-20240904-18-zlj4hw.JPG?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/617362/original/file-20240904-18-zlj4hw.JPG?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/617362/original/file-20240904-18-zlj4hw.JPG?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">The researchers collect samples from the within and outdoors of the noses of dead pigs.</span><br />
              <span class="attribution"><span class="source">Lavinia Iancu</span>, <a class="license" href="http://creativecommons.org/licenses/by-nd/4.0/">CC BY-ND</a></span><br />
            </figcaption></figure>
<p>Overall, we found that the bacterial species <a href="https://doi.org/10.3389/fmicb.2024.1392716">And </a> can best predict the time after death under extreme winter conditions, namely as much as six months after death, with an error margin of just over nine days. </p>
<p>We found that several types of bacteria are most abundant at different times. For example, levels increase from five weeks after death and are most abundant at ten weeks, while they increase between five and nine weeks and peak at 18 weeks. </p>
<h2>Improving forensics</h2>
<p>Death is commonly an uncomfortable topic to discuss. However, from a forensic perspective, techniques and methods to find out an individual&#39;s death will help bring justice and peace to family members.</p>
<p>Our study found that decomposition doesn&#8217;t stop completely even in cold environments. Studying the microenvironment – ​​the local conditions across the body, including temperature, humidity and microbial activity – can provide vital information in regards to the decomposition process. The major microbial species we identified served as <a href="https://doi.org/10.3389/fmicb.2024.1392716">Biomarkers of death</a>allowing us to develop time-of-death models that help researchers overcome the constraints of purely visual examination of stays.</p>
<p>Microbes can grow to be an important piece of the puzzle in solving a death, helping to ascertain more precise timelines even under extreme conditions.</p>
</p></div>
<p><em>image credit : theconversation.com</em></p>
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		<title>Under the microscope, sourdough reveals microbes which have been cultivated over generations</title>
		<link>https://bloggingthree.soflytech.com/2024/05/under-the-microscope-sourdough-reveals-microbes-which-have-been-cultivated-over-generations/</link>
		
		<dc:creator><![CDATA[chandankumarsoft]]></dc:creator>
		<pubDate>Wed, 01 May 2024 05:35:34 +0000</pubDate>
				<category><![CDATA[News]]></category>
		<category><![CDATA[cultivated]]></category>
		<category><![CDATA[generations]]></category>
		<category><![CDATA[microbes]]></category>
		<category><![CDATA[microscope]]></category>
		<category><![CDATA[reveals]]></category>
		<category><![CDATA[Sourdough]]></category>
		<guid isPermaLink="false">https://bloggingthree.soflytech.com/?p=2162</guid>

					<description><![CDATA[Sourdough is that oldest form of sourdough bread in recorded history, and folks have been eating it for hundreds of years. The ingredients for making sourdough are quite simple: flour and water. Mixing creates a living culture wherein yeast and bacteria ferment the sugars within the flour, forming byproducts that give the sourdough its characteristic [&#8230;]]]></description>
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<p>Sourdough is that <a href="https://doi.org/10.3390/microorganisms9071355">oldest form of sourdough bread</a> in recorded history, and folks have been eating it for hundreds of years.  The ingredients for making sourdough are quite simple: flour and water.  Mixing creates a living culture wherein yeast and bacteria ferment the sugars within the flour, forming byproducts that give the sourdough its characteristic taste and smell.  They also be certain that the dough rises within the absence of other leavening agents.</p>
<p>My sourdough starter, affectionately referred to as “Fosters” starter, was passed all the way down to me from my grandparents, who got it from my grandmother’s college roommate.  It has followed me throughout my academic profession across the country, from undergraduate in New Mexico to graduate school in Pennsylvania to postdoctoral work in Washington. </p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:71.22015915119363%;--background-color:#ae8856"><img decoding="async" alt="Sourdough starter in a jar next to a sliced ​​loaf of sourdough bread" class="lazyload" src="https://images.theconversation.com/files/591069/original/file-20240429-16-87hzif.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/591069/original/file-20240429-16-87hzif.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=428&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/591069/original/file-20240429-16-87hzif.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=428&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/591069/original/file-20240429-16-87hzif.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=428&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/591069/original/file-20240429-16-87hzif.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=537&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/591069/original/file-20240429-16-87hzif.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=537&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/591069/original/file-20240429-16-87hzif.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=537&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">You can thank the microbes for helping you make your sourdough.</span><br />
              <span class="attribution"><a class="source" href="https://www.gettyimages.com/detail/photo/sourdough-homemade-baking-copy-space-royalty-free-image/1250041346">leonori/iStock via Getty Images Plus</a></span><br />
            </figcaption></figure>
<p>It is currently based within the Midwest, where I work as a student at The Ohio State University <a href="https://scholar.google.com/citations?user=J8LvEVEAAAAJ&#038;hl=en">senior research assistant</a>We work with researchers to characterize samples in a wide range of fields, starting from food science to materials science.</p>
<p>As a part of a microscopy course I teach at university, I made a decision to take a more in-depth have a look at the microbial community in my family&#39;s sourdough using the microscope I take advantage of in my day by day research.</p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:71.22015915119363%;--background-color:#434343"><img decoding="async" alt="Micrograph of rod-shaped bacteria, elongated and spherical yeast and spherical starch grains" class="lazyload" src="https://images.theconversation.com/files/590530/original/file-20240425-20-ybjkyj.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/590530/original/file-20240425-20-ybjkyj.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=427&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/590530/original/file-20240425-20-ybjkyj.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=427&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/590530/original/file-20240425-20-ybjkyj.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=427&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/590530/original/file-20240425-20-ybjkyj.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=537&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/590530/original/file-20240425-20-ybjkyj.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=537&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/590530/original/file-20240425-20-ybjkyj.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=537&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">Each sourdough starter incorporates a novel mix of microbes.</span><br />
              <span class="attribution"><span class="source">Daniel Veghte</span>, <a class="license" href="http://creativecommons.org/licenses/by-sa/4.0/">CC BY-SA</a></span><br />
            </figcaption></figure>
<h2>Scanning electron microscopes</h2>
<p><a href="https://cemas.osu.edu/capabilities/scanning-electron-microscopy-sem">Scanning electron microscopy or SEM</a>is a strong tool that may image the surface of samples on the nanometer scale.  For comparison: a <a href="https://doi.org/10.4324/9781315119939">human hair</a> is between 10 and 150 micrometers, and the SEM could be used to watch features 10,000 times smaller. </p>
<p>Because SEM imaging uses electrons as a substitute of sunshine, there are limitations when imaging in a microscope.  Samples have to be electrically conductive and able to resist the very low pressures in a vacuum.  Low-pressure environments are generally unfavorable for microbes because these conditions cause the water in cells to evaporate and their structure to deform. </p>
<p>To prepare samples for SEM evaluation, researchers use a way called <a href="https://www.springer.com/series/7650">critical point drying</a> This rigorously dries the sample to cut back unwanted artifacts and preserve fantastic detail.  The sample is then coated with a skinny layer of iridium metal to make it conductive. </p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:75.06631299734748%;--background-color:#665436"><img decoding="async" alt="Round metal disc on a platform surrounded by a large cylindrical device" class="lazyload" src="https://images.theconversation.com/files/590528/original/file-20240425-16-wjxapv.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/590528/original/file-20240425-16-wjxapv.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=450&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/590528/original/file-20240425-16-wjxapv.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=450&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/590528/original/file-20240425-16-wjxapv.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=450&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/590528/original/file-20240425-16-wjxapv.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=566&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/590528/original/file-20240425-16-wjxapv.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=566&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/590528/original/file-20240425-16-wjxapv.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=566&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">Scanning electron microscopes can image nanoscale samples.</span><br />
              <span class="attribution"><span class="source">Daniel Veghte</span>, <a class="license" href="http://creativecommons.org/licenses/by-sa/4.0/">CC BY-SA</a></span><br />
            </figcaption></figure>
<h2>Exploring a sourdough starter</h2>
<p>Because sourdoughs are constructed from wild yeast and bacteria within the flour, it creates a good environment for a lot of species of microbes to thrive.  There could be <a href="https://doi.org/10.1016/j.tifs.2004.02.012">greater than 20 different species</a> Yeast and 50 several types of bacteria in a single sourdough.  The hardiest ones turn into the dominant species. </p>
<p>You can visually observe the microbial complexity of sourdough starter by imaging the assorted components that adjust in size and morphology, including yeast and bacteria.  However, a whole understanding of all the variety present within the starter would require: <a href="https://doi.org/10.1128/msphere.00950-19">complete gene sequencing</a>.</p>
<p>The essential ingredient that offers the starter its consistency are starch grains from the flour.  These grains, coloured green within the image, could be seen as relatively large spherical structures <a href="https://doi.org/10.1016/j.csbj.2023.08.019">about 8 micrometers</a> In diameter. </p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:66.57824933687002%;--background-color:#365155"><img decoding="async" alt="Microscopic image of rod-shaped bacteria, elongated and spherical yeast and spherical starch grains" class="lazyload" src="https://images.theconversation.com/files/587522/original/file-20240411-16-b3i74j.png?ixlib=rb-4.1.0&#038;rect=0%2C0%2C3072%2C2046&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/587522/original/file-20240411-16-b3i74j.png?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/587522/original/file-20240411-16-b3i74j.png?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/587522/original/file-20240411-16-b3i74j.png?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/587522/original/file-20240411-16-b3i74j.png?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=502&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/587522/original/file-20240411-16-b3i74j.png?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=502&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/587522/original/file-20240411-16-b3i74j.png?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=502&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">A false-color scanning electron microscope image of a sourdough starter shows starch grains (green), yeast (red), and bacteria (blue).</span><br />
              <span class="attribution"><span class="source">Daniel Veghte</span>, <a class="license" href="http://creativecommons.org/licenses/by-sa/4.0/">CC BY-SA</a></span><br />
            </figcaption></figure>
<p>The starter is created by the red coloured yeast.  As the yeast grows, it ferments sugars from the starch grains, releasing bubbles of carbon dioxide and alcohol as byproducts that make the dough rise.  Yeast generally falls into the range of <a href="https://doi.org/10.1099/00207713-50-5-1931">2 to 10 microns</a> large and round to elongated in shape.  In this picture you may see two several types of yeast: an almost round yeast at the underside left and an elongated yeast at the highest right.</p>
<p>Bacteria, coloured blue, metabolize sugar and <a href="https://doi.org/10.1016/j.tifs.2004.02.012">Release by-products</a> reminiscent of lactic acid and acetic acid.  These byproducts act as preservatives and provides the appetizer its characteristic sour smell and taste.  In this picture, bacteria have pill-like shapes <a href="https://doi.org/10.1016/B978-0-12-816687-1.00005-9">about 2 micrometers</a> in size. </p>
<p>Next time you eat sourdough bread or sourdough waffles – give them a try, they&#8217;re delicious!  – You can imagine the wealthy number of microorganisms that give every bit its distinctive taste.</p>
</p></div>
<p><em>image credit : theconversation.com</em></p>
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		<title>Infections after surgery usually tend to be brought on by bacteria already in your skin than microbes within the hospital, latest research finds</title>
		<link>https://bloggingthree.soflytech.com/2024/04/infections-after-surgery-usually-tend-to-be-brought-on-by-bacteria-already-in-your-skin-than-microbes-within-the-hospital-latest-research-finds/</link>
		
		<dc:creator><![CDATA[chandankumarsoft]]></dc:creator>
		<pubDate>Sun, 21 Apr 2024 22:52:39 +0000</pubDate>
				<category><![CDATA[Health]]></category>
		<category><![CDATA[bacteria]]></category>
		<category><![CDATA[caused]]></category>
		<category><![CDATA[finds]]></category>
		<category><![CDATA[hospital]]></category>
		<category><![CDATA[Infections]]></category>
		<category><![CDATA[microbes]]></category>
		<category><![CDATA[research]]></category>
		<category><![CDATA[skin]]></category>
		<category><![CDATA[surgery]]></category>
		<guid isPermaLink="false">https://bloggingthree.soflytech.com/?p=1168</guid>

					<description><![CDATA[Healthcare providers and patients have traditionally thought The infections that patients get within the hospital are brought on by superbugs that they&#8217;re exposed to during their stay in a medical facility. The genetic data of the bacteria that cause these infections—think CSI—tells a unique story: Most health-related infections are brought on by previously harmless bacteria [&#8230;]]]></description>
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<div itemprop="articleBody">
<p>Healthcare providers and patients have <a href="https://pubmed.ncbi.nlm.nih.gov/32644738/">traditionally thought</a> The infections that patients get within the hospital are brought on by superbugs that they&#8217;re exposed to during their stay in a medical facility.  The genetic data of the bacteria that cause these infections—think CSI—tells a unique story: Most <a href="https://www.cdc.gov/hai/infectiontypes.html">health-related infections</a> are brought on by previously harmless bacteria that patients already had on their bodies before they were admitted to the hospital. </p>
<p>Research compares bacteria within the microbiome—people who populate our noses, skin, and other areas of the body—with the bacteria that cause them <a href="https://doi.org/10.1001/jamanetworkopen.2020.12741">lung infection</a>, <a href="https://doi.org/10.1038/s41591-023-02549-4">Diarrhea</a>, <a href="https://doi.org/10.1001/jamanetworkopen.2023.39793">Bloodstream infections</a> And <a href="https://doi.org/10.2106/JBJS.M.00919">Surgical site infections</a> shows that the bacteria that live harmlessly on our own bodies once we are healthy are most frequently accountable for these nasty infections once we are sick.</p>
<p>Our newly published research in Science Translational Medicine adds to the growing variety of studies supporting this concept.  We show that many surgical site infections following spinal surgery are brought on by microbes <a href="https://www.science.org/doi/10.1126/scitranslmed.adk8222">already on the patient&#39;s skin</a>.</p>
<h2>Surgical infections are an ongoing problem</h2>
<p>Among the varied kinds of healthcare-associated infections, postoperative wound infections stand out as particularly problematic.  A 2013 study found that surgical site infections accounted for the biggest share of the annual cost of hospital-acquired infections overall <a href="https://doi.org/10.1001/jamainternmed.2013.9763">over 33% of the $9.8 billion</a> issued annually.  Postoperative wound infections are also a very important cause <a href="https://psnet.ahrq.gov/primer/surgical-site-infections">Hospital readmission and death</a> after the operation.</p>
<p>In our work as clinicians on the University of Washington Harborview Medical Center – yes, the one in Seattle <a href="https://seattlerefined.com/lifestyle/the-5-most-famous-seattle-landmarks-from-tv-shows-movies">“Grey’s Anatomy” is supposedly based on it</a> – We have seen how hospitals operate <a href="https://www.aorn.org/docs/default-source/aorn/toolkits/environmental-cleaning/presentations/environmental-cleaning-presentation-3-or-and-procedure-rooms.pptx">extraordinary lengths</a> to forestall these infections.  These include sterilizing all surgical equipment, using ultraviolet light to wash the operating room, maintaining strict surgical gown protocols, and monitoring airflow within the operating room.</p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:66.71087533156499%;--background-color:#519baa"><img decoding="async" alt="Surgeon helps another surgeon put on gloves" class="lazyload" src="https://images.theconversation.com/files/586982/original/file-20240409-20-xhv727.jpg?ixlib=rb-1.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/586982/original/file-20240409-20-xhv727.jpg?ixlib=rb-1.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/586982/original/file-20240409-20-xhv727.jpg?ixlib=rb-1.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/586982/original/file-20240409-20-xhv727.jpg?ixlib=rb-1.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/586982/original/file-20240409-20-xhv727.jpg?ixlib=rb-1.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/586982/original/file-20240409-20-xhv727.jpg?ixlib=rb-1.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/586982/original/file-20240409-20-xhv727.jpg?ixlib=rb-1.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">Hospitals follow strict protocols to forestall infections from surgical procedures.</span><br />
              <span class="attribution"><a class="source" href="https://www.gettyimages.com/detail/photo/female-doctor-helping-surgeon-wearing-glove-royalty-free-image/1156479713">Morsa Images/DigitalVision via Getty Images</a></span><br />
            </figcaption></figure>
<p>Nevertheless, postoperative wound infections occur after approx <a href="https://doi.org/10.1001/jamasurg.2013.4663">1 in 30 procedures</a>, normally without explanation.  While rates of many other medical complications showed regular improvement over time, data from the <a href="https://www.ahrq.gov/data/infographics/hac-rates_2019.html">Agency for Health Research and Quality</a> and that <a href="https://www.cdc.gov/hai/data/portal/progress-report.html">Centers for Disease Control and Prevention</a> show that the issue of postoperative wound infection is just not improving. </p>
<p>Since the administration of antibiotics during surgery is a cornerstone of infection prevention, the worldwide increase in <a href="https://doi.org/10.1016/s1473-3099(15)00270-4">Antibiotic resistance</a> Infection rates are predicted to extend following surgery.</p>
<h2>BYOB (Bring your personal bacteria)</h2>
<p>As a team of doctors and scientists with expertise including <a href="https://www.uwmedicine.org/bios/dustin-long">Intensive care</a>, <a href="https://aid.uw.edu/people/faculty/infectious-diseases/Chloe-Bryson-Cahn">Infectious diseases</a>, <a href="https://dlmp.uw.edu/faculty/salipante">Laboratory medicine</a>, <a href="https://dlmp.uw.edu/faculty/fang_ferric">microbiology</a>, <a href="https://sites.uw.edu/rxresidency/preceptors/infectious-diseases/">Pharmacy</a>, <a href="https://www.uwmedicine.org/bios/carlo-bellabarba">Orthopedics</a> And <a href="https://www.uwmedicine.org/bios/fangyi-zhang">Neurosurgery</a>We wanted to raised understand how and why our patients developed surgical infections despite following really useful protocols to forestall them. </p>
<p>Previous studies of surgical site infections were limited to a single species of bacteria and used older genetic evaluation methods.  But <a href="https://doi.org/10.1128/mbio.01424-22">latest technologies</a> have opened up the opportunity of studying every kind of bacteria while testing their antibiotic resistance genes.</p>
<p>We focused on infections in spine surgery for several reasons.  First, <a href="https://doi.org/10.3389%2Ffsurg.2022.983931">similar numbers</a> of men and women undergo spinal surgery for a wide range of reasons throughout their lives, meaning our findings can be applicable to a bigger group of individuals.  Second: more <a href="https://hcup-us.ahrq.gov/reports/statbriefs/sb281-Operating-Room-Procedures-During-Hospitalization-2018.jsp">Healthcare resources</a> are spent on spine surgery than another kind of surgery within the United States.  Third, infections can occur after spinal surgery <a href="https://doi.org/10.2106/jbjs.20.02141">particularly devastating</a> for patients, as repeated surgeries and long courses of antibiotics are sometimes required to have a probability of recovery.</p>
<p>Over a period of 1 yr, we took samples of the bacteria living within the nose, skin and stool of over 200 patients before surgery.  We then followed this group for 90 days to check these samples with subsequent infections.</p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:68.0371352785146%;--background-color:#5e552a"><img decoding="async" alt="Microscopy image of clusters of spherical bacteria colored yellow against a green background" class="lazyload" src="https://images.theconversation.com/files/586988/original/file-20240409-22-ukuc5a.jpg?ixlib=rb-1.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/586988/original/file-20240409-22-ukuc5a.jpg?ixlib=rb-1.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=408&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/586988/original/file-20240409-22-ukuc5a.jpg?ixlib=rb-1.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=408&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/586988/original/file-20240409-22-ukuc5a.jpg?ixlib=rb-1.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=408&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/586988/original/file-20240409-22-ukuc5a.jpg?ixlib=rb-1.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=513&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/586988/original/file-20240409-22-ukuc5a.jpg?ixlib=rb-1.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=513&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/586988/original/file-20240409-22-ukuc5a.jpg?ixlib=rb-1.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=513&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">    is a standard explanation for hospital-acquired bacterial infections.</span><br />
              <span class="attribution"><a class="source" href="https://phil.cdc.gov/Details.aspx?pid=10046">CDC/Janice Haney Carr/Jeff Hageman, MHS</a></span><br />
            </figcaption></figure>
<p>Our results showed that although the kinds of bacteria that live to tell the tale the skin of the back of patients vary significantly from individual to individual, there are still some <a href="https://www.science.org/doi/10.1126/scitranslmed.adk8222">some clear patterns</a>.  Bacteria that colonize within the upper back area across the neck and shoulders are more just like those within the nose;  those normally present within the lower back are more just like those within the intestines and stool.  The relative frequency of their occurrence in these skin regions largely reflects how often they occur in infections following surgery on the identical specific regions of the spine.</p>
<p>Actually, <a href="https://www.science.org/doi/10.1126/scitranslmed.adk8222">86% of bacteria</a> Infections caused after spinal surgery were genetically adapted to bacteria that a patient carried before the operation.  This number is remarkably close <a href="http://doi.org/10.1056/NEJMoa0808939">Estimates from previous studies</a> using older genetic techniques focused on .</p>
<p><a href="https://www.science.org/doi/10.1126/scitranslmed.adk8222">Almost 60% of infections</a> were also proof against the prophylactic antibiotic administered during surgery, to the antiseptic used to wash the skin before incision, or to each.  It turned out that the source of this antibiotic resistance was also not acquired within the hospital, but from microbes that the patient had already unknowingly lived with.  They likely acquired these antibiotic-resistant microbes through previous antibiotic exposure, consumer products, or routine community contact.</p>
<h2>Prevention of surgical infections</h2>
<p>At first glance, our results seem intuitive – surgical wound infections are brought on by bacteria residing on this a part of the body.  However, this finding has potentially serious implications for prevention and care.</p>
<p>If the almost certainly source of a surgical infection – the patient&#39;s microbiome – is understood upfront, this provides medical teams with the chance to guard against it before a planned procedure.  Current infection prevention protocols, reminiscent of antibiotics or topical antiseptics, follow a uniform model &#8211; for instance, the antibiotic cefazolin is used for this <a href="https://med.stanford.edu/content/dam/sm/bugsanddrugs/documents/clinicalpathways/SHC-Surgical-Prophylaxis-ABX-Guideline.pdf">Any patient undergoing most procedures</a> – but personalization could make them simpler.</p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:66.71087533156499%;--background-color:#59799a"><img decoding="async" alt="Surgeon with hand on patient&#39;s shoulder in hospital gown and cap" class="lazyload" src="https://images.theconversation.com/files/586991/original/file-20240409-20-xcocvo.jpg?ixlib=rb-1.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/586991/original/file-20240409-20-xcocvo.jpg?ixlib=rb-1.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/586991/original/file-20240409-20-xcocvo.jpg?ixlib=rb-1.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/586991/original/file-20240409-20-xcocvo.jpg?ixlib=rb-1.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/586991/original/file-20240409-20-xcocvo.jpg?ixlib=rb-1.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/586991/original/file-20240409-20-xcocvo.jpg?ixlib=rb-1.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/586991/original/file-20240409-20-xcocvo.jpg?ixlib=rb-1.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">Personalizing infection prevention protocols for every patient can assist make them simpler.</span><br />
              <span class="attribution"><a class="source" href="https://www.gettyimages.com/detail/photo/nurse-talking-and-doing-a-emotional-support-to-a-royalty-free-image/1273004607">FG Trade/E+ via Getty Images</a></span><br />
            </figcaption></figure>
<p>If you had major surgery today, nobody would know whether the realm where your incision can be made was colonized with bacteria that were proof against the usual antibiotic therapy for that procedure.  In the long run, doctors could use details about your microbiome to pick out more targeted antimicrobials.  However, further research is required on easy methods to interpret this information and to know whether such an approach would ultimately lead to raised results.</p>
<p>Today, <a href="https://www.aorn.org/outpatient-surgery/article/2020-January-infection-prevention-4-ways-to-wipe-away-surgical-site-infections">Practice guidelines</a>, <a href="https://www.prnewswire.com/news-releases/surfacide-announces-expansion-of-uv-c-disinfection-technology-across-all-medstar-health-hospital-locations-301748399.html">commercial product development</a>hospital <a href="https://apic.org/Resource_/TinyMceFileManager/Resources/ORMVol29No3ORCleaning.pdf">Protocols</a> And <a href="https://store.jcrinc.com/assets/1/7/nexclean_environinfectionprevention_%28002%29.pdf">Accreditation</a> In the context of infection prevention, the main focus is commonly on the sterility of the physical environment.  The proven fact that most infections don&#8217;t actually originate within the hospital is probably going a testament to the effectiveness of those protocols.  However, we consider that shifting to more patient-centered, individualized approaches to infection prevention has the potential to profit hospitals and patients alike.</p>
</p></div>
<p><em>image credit : theconversation.com</em></p>
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