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	<title>editing &#8211; USA NEWS LIVE</title>
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	<title>editing &#8211; USA NEWS LIVE</title>
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		<title>Fetal genome editing is imminent – ​​a medical anthropologist explains why ethical discussions with goal communities should occur sooner fairly than later</title>
		<link>https://bloggingthree.soflytech.com/2024/08/fetal-genome-editing-is-imminent-a-medical-anthropologist-explains-why-ethical-discussions-with-goal-communities-should-occur-sooner-fairly-than-later/</link>
		
		<dc:creator><![CDATA[chandankumarsoft]]></dc:creator>
		<pubDate>Fri, 16 Aug 2024 23:12:01 +0000</pubDate>
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		<guid isPermaLink="false">https://bloggingthree.soflytech.com/?p=12146</guid>

					<description><![CDATA[Although their primary goal is to advance scientific knowledge, most scientists are neither trained nor motivated to think through the societal implications of the technologies they develop. Even in genomic medicine, which is geared towards helping future patients, time and funding pressures make it difficult to Real-time ethics control difficult. In 2015, three years after [&#8230;]]]></description>
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<p>Although their primary goal is to advance scientific knowledge, most scientists are neither trained nor motivated to think through the societal implications of the technologies they develop. Even in genomic medicine, which is geared towards helping future patients, time and funding pressures make it difficult to <a href="https://doi.org/10.1080/23294515.2020.1722289">Real-time ethics control difficult</a>.</p>
<p>In 2015, three years after scientists discovered  permanently alter the human genome, <a href="https://doi.org/10.1126/science.aab1028">made a press release</a> to stop the usage of germline genome editing, a controversial variety of genome editing by which DNA changes are also passed on to the patient&#39;s future biological descendants.<br />In their statement, the scientists called for an “open discussion about benefits and risks” before the experiments could begin. But this discussion never took place. </p>
<p>By 2018, at the least two babies were born through germline editing with <a href="https://doi.org/10.1126/science.aaw1839">Embryos that were genetically modified in China</a>Without preventive ethics or clear regulatory guidelines, you occasionally get the odd &#8220;cowboy scientist&#8221; who will test the bounds of experiments until you tell him to stop. </p>
<p>After I discovered in regards to the babies, <a href="https://doi.org/10.1038/d41586-018-07881-1">Scientists continued to speak – but mainly amongst themselves</a>. Then in 2020 a <a href="https://www.nationalacademies.org/our-work/international-commission-on-the-clinical-use-of-human-germline-genome-editing">Report of the International Commission</a> In all contributions that brought together expert opinions, there was a call for a societal discussion about whether germline editing may very well be ethically justifiable.  </p>
<p>I&#8217;m a <a href="https://profiles.ucsf.edu/julia.brown">Medical anthropologist and bioethicist</a> which examines the values ​​and experiences driving the event of prenatal gene therapies, including genome editing. </p>
<p>Prenatal genome editing in humans has – so far as we all know – not yet taken place. Prenatal genome editing is just not the identical as editing <a href="https://www.sciencedirect.com/topics/agricultural-and-biological-sciences/ex-vivo">Ex vivo embryos</a>because the Chinese scientist did, because prenatal editing involves editing the DNA of a fetus that&#8217;s visible within the womb of a pregnant person – without the intention of affecting future offspring. </p>
<p>However, the societal impact of this technology remains to be enormous, and researchers can start exploring the moral features now by engaging communities well upfront. </p>
<h2>Involve communities</h2>
<p>You can&#39;t really predict how technologies may benefit society without people in society saying something about it. In particular, potential users of the technology may need their very own experiences to supply. In 2022, a residents&#39; jury consisting of <a href="https://www.cam.ac.uk/stories/citizens-jury">People affected by a genetic disease</a> They voted that germline editing of human embryos may very well be ethical – if a lot of specific conditions akin to transparency and equal access were met. </p>
<p>Recently, the National Council on Disability within the USA published a <a href="https://www.ncd.gov/report/from-fetal-surgery-to-gene-editing-the-current-and-potential-impact-of-prenatal-interventions-on-people-with-disabilities/">report their concerns about embryo and prenatal editing</a>Their biggest concern was the potential of increased discrimination against individuals with disabilities.</p>
<p>Some people see stopping the birth of individuals with certain genetic characteristics <a href="https://www.thenation.com/article/archive/can-we-cure-genetic-diseases-without-slipping-into-eugenics/">as a type of eugenics</a>the disturbing practice of treating genetic traits of a social group as undesirable and attempting to remove them from the human gene pool. However, genetic traits are sometimes linked to an individual&#39;s social identity &#8211; treating certain traits as undesirable within the human gene pool may be deeply discriminatory. </p>
<p>The lack of a baby to a serious genetic disease causes profound suffering for families. But the identical genes that cause disease may create human identity and community. As the National Council on Disability <a href="https://www.ncd.gov/report/from-fetal-surgery-to-gene-editing-the-current-and-potential-impact-of-prenatal-interventions-on-people-with-disabilities/">in his report</a>People with disabilities can have a great quality of life in the event that they receive sufficient social support. </p>
<p>It is just not easy, <a href="https://doi.org/10.12688/wellcomeopenres.19473.2">Involve non-scientists</a> in discussions about genetics. And people have different values, which implies <a href="https://undark.org/2024/05/16/opinion-science-courts-public-trust-science/">Community consultations</a> that something that works in a single context may not work in one other. But in my experience, scientific developments usually tend to profit potential users when the developers of the technology take into consideration user concerns. </p>
<h2>Not just in regards to the fetus</h2>
<p>Prenatal human genome editing, also generally known as <a href="https://www.statnews.com/2024/02/21/fetal-surgery-tippi-mackenzie-in-utero-gene-therapy/">fetal genome surgery</a>offers the potential of treating cellular disease processes at an early stage and maybe even stopping symptoms from occurring in any respect. Treatment may very well be more direct and efficient than after birth. For example, gene therapy introduced into the brain of the fetus could <a href="https://doi.org/10.1002/jgm.630">reach all the central nervous system</a>. </p>
<figure>
<p><iframe title="What is gene editing and how does it work? | The Royal Society" width="1170" height="658" src="https://www.youtube.com/embed/XPDb8tqgfjY?feature=oembed" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" referrerpolicy="strict-origin-when-cross-origin" allowfullscreen></iframe></p><figcaption><span class="caption">Genome editing technology has advanced rapidly in recent a long time. Prenatal genome editing differs from editing embryos outside the human body since it involves editing a fetus contained in the pregnant person&#39;s body.</span></figcaption></figure>
<p>However, the pregnant person can be inevitably involved within the processing of a fetus. </p>
<p>In the Eighties <a href="https://doi.org/10.21037/tp-20-114">Scientists succeeded in performing an operation on a fetus</a> for the primary time. This made the fetus a patient and a direct recipient of health care. </p>
<p>Viewing the fetus as a separate patient simplifies the maternal-fetal relationship. In the past, this has <a href="https://www.rutgersuniversitypress.org/the-making-of-the-unborn-patient/9780813525167/">the interests of the pregnant person</a>. </p>
<p>And since editing the fetal genome could harm the expectant parents or require an abortion, any discussion about prenatal genetic interventions can be <a href="https://doi.org/10.1080/15265161.2022.2027563">a discussion about access to abortion</a>Editing the genes of a fetus is just not nearly editing that fetus and stopping genetic diseases.</p>
<h2>Prenatal genome editing versus embryo editing</h2>
<p>Prenatal genome editing is a component of the broader spectrum of human genome editing, which ranges from the germline, where the changes are heritable, to the somatic cell, where the patient&#39;s offspring don&#8217;t inherit the changes. Prenatal genome editing is, in theory, somatic cell editing.</p>
<figure class="align-center zoomable">
<div class="placeholder-container" style="--aspect-ratio-percent:66.71087533156499%;--background-color:#ab7452"><img decoding="async" alt="A doctor performs an ultrasound scan on a pregnant person." class="lazyload" src="https://images.theconversation.com/files/611908/original/file-20240806-17-tpmiay.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;fit=clip" srcset="https://images.theconversation.com/files/611908/original/file-20240806-17-tpmiay.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=1 600w, https://images.theconversation.com/files/611908/original/file-20240806-17-tpmiay.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=2 1200w, https://images.theconversation.com/files/611908/original/file-20240806-17-tpmiay.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=600&#038;h=400&#038;fit=crop&#038;dpr=3 1800w, https://images.theconversation.com/files/611908/original/file-20240806-17-tpmiay.jpg?ixlib=rb-4.1.0&#038;q=45&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=1 754w, https://images.theconversation.com/files/611908/original/file-20240806-17-tpmiay.jpg?ixlib=rb-4.1.0&#038;q=30&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=2 1508w, https://images.theconversation.com/files/611908/original/file-20240806-17-tpmiay.jpg?ixlib=rb-4.1.0&#038;q=15&#038;auto=format&#038;w=754&#038;h=503&#038;fit=crop&#038;dpr=3 2262w" sizes="(min-width: 1466px) 754px, (max-width: 599px) 100vw, (min-width: 600px) 600px, 237px"></div><figcaption>
              <span class="caption">Prenatal genome editing allows scientists to edit the genome of a fetus.</span><br />
              <span class="attribution"><a class="source" href="https://www.gettyimages.com/detail/photo/doctor-with-a-pregnant-woman-royalty-free-image/1449420204?phrase=prenatal+gene+editing&#038;adppopup=true">Zorica Nastasic/E+ via Getty Images</a></span><br />
            </figcaption></figure>
<p>There remains to be a small risk of accidental germline editing. “Editing” a genome could be a misleading metaphor. When gene editing was first developed, it was less like cutting and pasting genes and more like sending <a href="https://us.macmillan.com/books/9781250265357/themutantproject">in a drone that may hit and miss its goal</a> – a chunk of DNA. It can alter the genome in intended and sometimes unintended ways. As technology advances, gene editing is becoming less like a drone and more like a surgical cut.</p>
<p>Ultimately, researchers won&#8217;t know whether there shall be unintended, accompanying germline changes until a long time later. That would require editing the genomes of a big variety of fetuses, waiting for those fetuses to be born, after which waiting to research the genomes of their future offspring. </p>
<h2>Unresolved health equity issues</h2>
<p>Another vital ethical query concerns who would have access to those technologies. To distribute prenatal genomic therapies fairly, technology developers and health systems would want to deal with each cost and trust issues.</p>
<p>Let us take for instance <a href="https://www.nytimes.com/2024/05/06/health/sickle-cell-cure-first.html">recent genome editing treatments</a> for kids with sickle cell anemia. This disease mainly affects black families, who proceed <a href="https://www.usccr.gov/reports/2021/racial-disparities-maternal-health">significant inequalities and barriers</a> in access to each prenatal care and general health care. </p>
<p>Editing the fetus as an alternative of a toddler or adult could potentially reduce healthcare costs. Because a fetus is smaller, doctors would use fewer gene editing materials and manufacturing costs could be lower. In addition, treating the disease early could reduce the prices the patient might incur over their lifetime.</p>
<figure>
<p><iframe title="Teen is one of the first ever to get his genes edited. Why he says the process is &#039;cool and freaky&#039;" width="1170" height="658" src="https://www.youtube.com/embed/0xv0CBujwZU?feature=oembed" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" referrerpolicy="strict-origin-when-cross-origin" allowfullscreen></iframe></p><figcaption><span class="caption">An American teenager received gene editing treatment for his sickle cell anemia. Many victims face barriers to treatment within the US health care system.</span></figcaption></figure>
<p>Nevertheless, all genome editing techniques <a href="https://doi.org/10.1080/15265161.2018.1489653">are expensive</a>Treatment of a 12-year-old with sickle cell anemia using genome editing <a href="https://www.nytimes.com/2024/05/06/health/sickle-cell-cure-first.html">currently costs 3.1 million US dollars</a>While some academics <a href="https://doi.org/10.1038/s41434-023-00392-3">Making genome editing more cost-effective</a>there has not been much progress yet.</p>
<p>It&#39;s also about trust. <a href="https://doi.org/10.1002/pd.6507">I even have heard from families from groups which can be underrepresented in genomic research</a> who say they&#8217;re hesitant to take part in prenatal diagnostic research in the event that they don&#8217;t trust the health care team conducting the research. This variety of research is step one in constructing models for treatments akin to prenatal genome editing. In addition, these underrepresented families are likely to <a href="https://doi.org/10.1186/s12889-022-13122-y">less trust</a> within the healthcare system as a complete.  </p>
<p>Although prenatal genome editing holds immense potential for scientific discovery, scientists and developers should bring potential users – the individuals who stand to achieve or lose probably the most from this technology – to the decision-making table to get the clearest picture possible of what impact these technologies could have on society.</p>
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<p><em>image credit : theconversation.com</em></p>
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		<title>Artificial intelligence and genome editing promise to spice up biotechnology</title>
		<link>https://bloggingthree.soflytech.com/2024/06/artificial-intelligence-and-genome-editing-promise-to-spice-up-biotechnology/</link>
		
		<dc:creator><![CDATA[chandankumarsoft]]></dc:creator>
		<pubDate>Thu, 06 Jun 2024 17:23:28 +0000</pubDate>
				<category><![CDATA[News]]></category>
		<category><![CDATA[artificial]]></category>
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		<guid isPermaLink="false">https://bloggingthree.soflytech.com/?p=5575</guid>

					<description><![CDATA[During their Nobel Prize Lecture on Chemistry Frances Arnold said in 2018: “Today we can read, write and edit virtually any DNA sequence, but we cannot assemble it.” That is not any longer true. Since then, science and technology have advanced a lot that artificial intelligence has learned to assemble DNA, and with the assistance [&#8230;]]]></description>
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<p>During their <a href="https://www.nobelprize.org/uploads/2018/10/arnold-lecture.pdf">Nobel Prize Lecture on Chemistry</a> Frances Arnold said in 2018: “Today we can read, write and edit virtually any DNA sequence, but we cannot assemble it.” That is not any longer true.</p>
<p>Since then, science and technology have advanced a lot that artificial intelligence has learned to assemble DNA, and with the assistance of genetically modified bacteria, scientists are on the approach to designing and producing customized proteins. </p>
<p>The goal is that scientists can use the design power of artificial intelligence and the technical capabilities of genome editing to engineer bacteria to act as mini-factories, producing latest proteins that may reduce greenhouse gases, digest plastics or act as species-specific pesticides.</p>
<p>As a <a href="https://scholar.google.ca/citations?hl=en&#038;user=RpiSPiwAAAAJ&#038;view_op=list_works&#038;sortby=pubdate">Chemistry professor and computational chemist</a> As a student of molecular science and environmental chemistry, I&#8217;m convinced that advances in artificial intelligence and genome editing make this a practical possibility.</p>
<h2>Gene sequencing – reading the recipes of life</h2>
<p>All living things contain genetic material &#8211; DNA and RNA &#8211; that gives the hereditary information they should reproduce and make proteins. Proteins make up 75% of human dry weight. They make up muscles, enzymes, hormones, blood, hair and cartilage. To understand proteins, you&#8217;ve to grasp numerous biology. The order of nucleotide bases in DNA, or RNA in some viruses, encodes this information, and genomic sequencing technologies discover the order of those bases.</p>
<p>The <a href="https://www.genome.gov/human-genome-project">Human Genome Project</a> was a global project that sequenced the complete human genome from 1990 to 2003. Thanks to rapidly improving technologies, it took seven years to sequence the primary 1% of the genome and one other seven years to sequence the remaining 99%. By 2003, scientists had the whole sequence of the three billion nucleotide base pairs that code for 20,000 to 25,000 genes within the human genome. </p>
<p>However, understanding the function of most proteins and correcting their malfunctions remained a challenge.</p>
<h2>AI learns proteins</h2>
<p>The shape of every protein is crucial to its function and is set by the sequence of its amino acids, which in turn is set by the nucleotide sequence of the gene. Misfolded proteins have the improper shape and <a href="https://doi.org/10.1016/j.arr.2023.102017">may cause disease</a> comparable to neurodegenerative diseases, cystic fibrosis and kind 2 diabetes. To understand these diseases and develop treatments, knowledge of protein shapes is obligatory. </p>
<p>Before 2016, the one approach to determine the form of a protein was to <a href="https://chem.libretexts.org/Bookshelves/Analytical_Chemistry/Supplemental_Modules_%28Analytical_Chemistry%29/Instrumentation_and_Analysis/Diffraction_Scattering_Techniques/X-ray_Crystallography">X-ray crystallography</a>a laboratory technique that uses the diffraction of X-rays from single crystals to find out the precise arrangement of atoms and molecules in three dimensions inside a molecule. At that point, the structure of about 200,000 proteins had been determined by crystallography, at a price of billions of dollars. </p>
<p>AlphaFold, a machine learning program, used these crystal structures as a training set to find out the form of proteins from their nucleotide sequences. And in lower than a 12 months, this system calculated the protein structures of all 214 million genes which were sequenced and published. The protein structures determined by AlphaFold were all compiled right into a <a href="https://alphafold.ebi.ac.uk/">freely available database</a>.</p>
<p>To effectively treat non-infectious diseases and develop latest drugs, scientists need a greater understanding of how proteins, particularly enzymes, bind small molecules. Enzymes are protein catalysts that enable and regulate biochemical reactions. </p>
<figure>
<p><iframe title="AlphaFold Server Demo - Google DeepMind" width="1170" height="658" src="https://www.youtube.com/embed/9ufplEgtq8w?feature=oembed" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share" referrerpolicy="strict-origin-when-cross-origin" allowfullscreen></iframe></p><figcaption><span class="caption">The AlphaFold3 AI system enables scientists to create extremely detailed models of the molecular machinery of life.</span></figcaption></figure>
<p><a href="https://blog.google/technology/ai/google-deepmind-isomorphic-alphafold-3-ai-model/">AlphaFold3</a>published on May 8, 2024, can predict protein shapes and the sites where small molecules can bind to those proteins. In <a href="https://www.azolifesciences.com/article/Insight-into-Rational-Drug-Design.aspx">Rational drug design</a>Drugs are designed to bind proteins involved in a signaling pathway related to the disease being treated. The small molecule drugs bind to the protein binding site and modulate its activity, thereby affecting the disease progression. By with the ability to predict protein binding sites, AlphaFold3 will improve researchers&#39; drug development capabilities. </p>
<h2>AI + CRISPR = composition of latest proteins</h2>
<p>Around 2015, <a href="https://www.jax.org/personalized-medicine/precision-medicine-and-you/what-is-crispr">CRISPR technology</a> revolutionized gene editing. CRISPR may be used to search out a selected a part of a gene, change or delete it, make the cell express kind of of its gene product, and even add a totally foreign gene as a substitute. </p>
<p>In 2020, Jennifer Doudna and Emmanuelle Charpentier were awarded the Nobel Prize in Chemistry &#8220;for the development of a method (CRISPR) for genome editing.&#8221; With CRISPR, genome editing, which used to take years and was species-specific, expensive and laborious, can now be done in a matter of days and at a fraction of the price.</p>
<p>AI and genetic engineering are making rapid progress. What was once complicated and expensive is now routine. The dream for the long run is customized proteins designed and produced through a mix of machine learning and CRISPR-modified bacteria. AI would develop the proteins, and bacteria modified with CRISPR would produce the proteins. Enzymes produced this manner could potentially breathe in carbon dioxide and methane while respiration out organic feedstocks, or break down plastics into concrete substitutes.</p>
<p>I consider that these ambitions usually are not unrealistic, considering that genetically modified organisms <a href="https://doi.org/10.1080/15228053.2023.2286781">already account for two% of the US economy</a> in agriculture and pharmaceuticals.</p>
<p>Two groups have created functioning enzymes from scratch, designed by different AI systems. <a href="https://scholar.google.com/citations?hl=en&#038;user=UKqIqRsAAAAJ&#038;view_op=list_works&#038;sortby=pubdate">David Baker</a>&#39;S <a href="https://www.ipd.uw.edu/">Institute for Protein Design</a> on the University of Washington developed a brand new deep learning-based protein design strategy called “<a href="https://doi.org/10.1038/s41586-023-05696-3">family-wide hallucination</a>”, which she used to <a href="https://doi.org/10.1038/s41586-023-05696-3">produce a singular light-emitting enzyme</a>. The biotech startup has now <a href="https://www.profluent.bio/">They will flow</a>used an AI that was trained with the sum of all CRISPR-Cas knowledge <a href="https://doi.org/10.1101/2024.04.22.590591">to design latest functional genome editors</a>.</p>
<p>If AI can learn to create latest CRISPR systems in addition to bioluminescent enzymes that work and have never been seen on Earth, there may be hope that the mixture of CRISPR and AI may be used to create other latest customized enzymes. Although the CRISPR-AI combination continues to be in its infancy, once it&#8217;s mature, it must be very useful and even help the world fight climate change. </p>
<p>However, one must not forget that the more powerful a technology is, <a href="https://press.princeton.edu/books/hardcover/9780691154701/the-butterfly-defect">the greater the risks</a> it poses. In addition, people have <a href="https://www.penguinrandomhouse.com/books/617060/under-a-white-sky-by-elizabeth-kolbert/">not very successful in constructing nature</a> on account of the complexity and interconnectedness of natural systems, which regularly results in unintended consequences.</p>
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<p><em>image credit : theconversation.com</em></p>
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